Welcome, Revigo can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. Read more about Revigo on our Frequently Asked Questions page.
Please enter a list of Gene Ontology IDs below, each on its own line. The GO IDs may be followed by value which describes the GO term in a way meaningful to you. The value(s) must have a dot '.' for a decimal separator. (Hoover with a mouse over an icon for additional info)
How large would you like the resulting list to be: Large (0.9) Medium (0.7) Small (0.5) Tiny (0.4)
If provided, the values associated with GO terms represent: P value Higher value is better Lower value is better Higher absolute value is better Higher absolute log2 value is better
Would you like to remove obsolete GO terms: Yes (default) No
What species would you like to work with: Whole UniProt database (default) Arabidopsis thaliana (3702) Bacillus subtilis subsp. subtilis str. 168 (224308) Bos taurus (9913) Caenorhabditis elegans (6239) Chlamydomonas reinhardtii (3055) Cicer arietinum (3827) Danio rerio (7955) Dictyostelium discoideum (44689) Drosophila melanogaster (7227) Escherichia coli K-12 (83333) Gallus gallus (9031) Homo sapiens (9606) Mus musculus (10090) Mycobacterium tuberculosis H37Rv (83332) Oryza sativa Japonica Group (39947) Plasmodium falciparum 3D7 (36329) Pseudomonas aeruginosa PAO1 (208964) Rattus norvegicus (10116) Saccharomyces cerevisiae S288C (559292) Salpingoeca rosetta (946362) Schizosaccharomyces pombe 972h- (284812) Solanum lycopersicum (4081) Synechocystis sp. PCC 6803 substr. Kazusa (1111708) Takifugu rubripes (31033) Xenopus tropicalis (8364) Zea mays (4577)
What semantic similarity measure would you like to use: SimRel (default) Lin Resnik (normalized) Jiang and Conrath
If you found Revigo useful in your work, please cite the following reference: Supek F, Bošnjak M, Škunca N, Šmuc T. "REVIGO summarizes and visualizes long lists of Gene Ontology terms" PLoS ONE 2011. doi:10.1371/journal.pone.0021800
Revigo is an iProject funded by the Ministry of Science and Education, Republic of Croatia (2008-057) and Ruđer Bošković Institute. The Revigo project was implemented at the Division of electronics, Ruđer Bošković Institute.
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