Rudjer Boskovic Institute,
Croatia

Welcome to REVIGO!

REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, interactive graphs, or tag clouds. More about REViGO... | 

Please enter a list of Gene Ontology IDs below, each on its own line. The GO IDs may be followed by p-values or another quantity which describes the GO term in a way meaningful to you.

Examples:

• #1 - Supek et al. (2010) PLoS Genet,
• #2 - Ester et al. (2010) Inv New Drug,
• #3 - Van't Veer et al. (2002) Nature

Allowed similarity:  How large would you like the resulting list to be?
Large (allowed similarity=0.9) Medium (0.7) Small (0.5) Tiny (0.4)

If provided, the numbers associated with GO terms represent: P value Higher value is better Lower value is better Higher absolute value is better Higher absolute log2 value is better

Advanced options:

Select a species you want to work with: Whole UniProt database (default) Arabidopsis thaliana Bacillus subtilis subsp. subtilis str. 168 Bos taurus Caenorhabditis elegans Caulobacter vibrioides CB15 Chlamydomonas reinhardtii Danio rerio Dictyostelium discoideum Drosophila melanogaster Escherichia coli K-12 Gallus gallus Homo sapiens Mus musculus Mycobacterium tuberculosis H37Rv Mycoplasma genitalium G37 Mycoplasma pneumoniae M129 Oryza sativa Japonica Group Plasmodium falciparum 3D7 Pseudomonas aeruginosa PAO1 Rattus norvegicus Saccharomyces cerevisiae S288C Schizosaccharomyces pombe 972h- Synechocystis sp. PCC 6803 substr. Kazusa Takifugu rubripes Zea mays   

Select a semantic similarity measure to use: SimRel Lin Resnik (normalized) Jiang and Conrath